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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14880543_14882235_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14880543 - 14882235
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCATCGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTCCTCTCATCG
Flanking Amino Acid:
FSEQSWMDLKGLFLHSTSDQ
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
79.6
29.7
Major BPS
79.2
0.72
1
75
40
Major PPT
71.9
0.49
0.9
69.1
36.9
Minor 5ss
36.9
-1.5
2.7
44.2
43.6
Minor BPS
47.9
-0.2
1.9
56.56
44.9

Associated Gene:

Gene:
SUSD2
Ensembl Gene ID:
ENSAPLG00000010889
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011344
14870879 - 14894753
23875