Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14882392_14884118_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14882392 - 14884118

Intron Length:

1727

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTCGGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGGTAT

U12 Branch Point Sequence:

GGTATCTTGAGG

Flanking Amino Acid:

GRTQQAHFPNGTEAQVTGLS

Intron Amino Acid Position:

489

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

71.5

41.1

Major BPS

56.4

0.16

1.6

57.4

49.1

Major PPT

68.3

0.41

1.2

71.9

38.3

Minor 5ss

39.7

-1.2

2.8

46.4

44.2

Minor BPS

48.4

-0.2

1.8

52.37

42.2

Associated Gene:

Gene:

SUSD2

Ensembl Gene ID:

ENSAPLG00000010889

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011344

14870879 - 14894753

23875