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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14884263_14886113_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14884263 - 14886113
Intron Length:
1851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTTTTAAAA
Flanking Amino Acid:
DCRTYHPPQAASAFGDPHFF
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.1
0.36
1.1
61
42.7
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
62.6
0.39
1.4
69.43
36.8

Associated Gene:

Gene:
SUSD2
Ensembl Gene ID:
ENSAPLG00000010889
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011344
14870879 - 14894753
23875