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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14887060_14888159_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14887060 - 14888159
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAA
U12 Branch Point Sequence:
GCTTCATTAAGC
Flanking Amino Acid:
QARADTGRFHTDYGCDIEKG
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.1
24.7
Major BPS
63
0.32
1.1
54.3
41.1
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
44.3
-0.6
2.9
62.8
42
Minor BPS
58.1
0.23
1.9
68.26
43

Associated Gene:

Gene:
SUSD2
Ensembl Gene ID:
ENSAPLG00000010889
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011344
14870879 - 14894753
23875