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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14888362_14890623_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14888362 - 14890623
Intron Length:
2262

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATCTATCAAAT
Flanking Amino Acid:
ITPSTYSDGQSNIPSVWSSA
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
92.3
0.95
0.6
88.4
21.3
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
48.1
-0
1.9
69.82
40

Associated Gene:

Gene:
SUSD2
Ensembl Gene ID:
ENSAPLG00000010889
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011344
14870879 - 14894753
23875