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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14893062_14894686_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14893062 - 14894686
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTAATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGTTCTTTAATA
Flanking Amino Acid:
LFSLSALWNTGAQDSCSQQC
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
63.1
0.3
1.2
69.4
40
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
82.1
1
1
83.91
29.8

Associated Gene:

Gene:
SUSD2
Ensembl Gene ID:
ENSAPLG00000010889
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011344
14870879 - 14894753
23875