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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1531532_1561010_F

Intron Information:

Intron Rank:
138364
Intron Class:
major
Intron Phase:
Intron Coordinates:
1531532 - 1561010
Intron Length:
29479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.6
84
24.1
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
55.9
0.18
2.1
77.1
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024456
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026480
1531527 - 1561348
29822