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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1537440_1538431_R

Intron Information:

Intron Rank:
136874
Intron Class:
major
Intron Phase:
Intron Coordinates:
1537440 - 1538431
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
AATGTGTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGAAAATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69.4
0.44
1
61.9
43.7
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
46.9
-0.1
1.9
66.64
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044702
1528477 - 1539114
10638