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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1538611_1540413_R

Intron Information:

Intron Rank:
136868
Intron Class:
major
Intron Phase:
Intron Coordinates:
1538611 - 1540413
Intron Length:
1803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTTTGCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
86.4
0.82
0.8
80.9
31.1
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
48
-0
2.2
71.65
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027270
1538323 - 1541399
3077