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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1561079_1561193_F

Intron Information:

Intron Rank:
138370
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1561079 - 1561193
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTATCATGAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
55.4
0.12
1.2
57.5
41.3
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
57.1
0.22
1.8
72.51
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024456
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040437
1560940 - 1562109
1170