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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1561079_1561448_F

Intron Information:

Intron Rank:
138368
Intron Class:
major
Intron Phase:
Intron Coordinates:
1561079 - 1561448
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCAACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
67
0.38
0.9
59.2
35.3
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
52.1
0.06
2.2
74.08
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024456
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032545
1553978 - 1562109
8132