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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1561466_1561823_F

Intron Information:

Intron Rank:
138369
Intron Class:
major
Intron Phase:
Intron Coordinates:
1561466 - 1561823
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024456
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040437
1560940 - 1562109
1170
ENSAPLT00000032545
1553978 - 1562109
8132