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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1570988_1577039_F

Intron Information:

Intron Rank:
136723
Intron Class:
major
Intron Phase:
Intron Coordinates:
1570988 - 1577039
Intron Length:
6052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCAAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.2
0.72
0.9
80.1
31.8
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
57.5
0.23
1.9
75.53
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019794
1569913 - 1586573
16661