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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1577238_1586375_F

Intron Information:

Intron Rank:
136724
Intron Class:
major
Intron Phase:
Intron Coordinates:
1577238 - 1586375
Intron Length:
9138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
ATCTGCATATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
81.4
0.71
0.9
76.5
37.5
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
42.8
-0.6
2.2
50.18
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023646
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019794
1569913 - 1586573
16661