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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1590472_1591067_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1590472 - 1591067
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGAAAG
5'SS Class:
major
3'SS Sequence:
TTCAAACCAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTCAATT
Flanking Amino Acid:
RVPQTVPKPLGLQISAGFQE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.3
71.6
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
58.6
0.19
1
52.5
36.6
Minor 5ss
28.2
-2.5
2.7
31.3
42.4
Minor BPS
76.7
0.92
1.4
91.82
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593
ENSAPLT00000031579
1588541 - 1608658
20118
ENSAPLT00000012861
1588541 - 1608658
20118