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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1591194_1591944_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1591194 - 1591944
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ACTTTTGTAACC
Flanking Amino Acid:
AIEHVRESKTGSSGIMIKLI
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72.1
33.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.3
0.59
0.8
73.8
29.6
Minor 5ss
46.7
-0.3
2.4
56
43.5
Minor BPS
55.2
0.14
2
67.42
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593
ENSAPLT00000031579
1588541 - 1608658
20118
ENSAPLT00000012861
1588541 - 1608658
20118