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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1592160_1592989_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1592160 - 1592989
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTTTTGTTAATC
Flanking Amino Acid:
LFLPKKLGNKVTEVFSKTRN
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
75.5
29.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.2
0.75
0.9
80.8
36.8
Minor 5ss
40.3
-1.1
3.1
55.2
49
Minor BPS
61.9
0.35
2
74.33
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593
ENSAPLT00000031579
1588541 - 1608658
20118
ENSAPLT00000012861
1588541 - 1608658
20118