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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1593857_1595485_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1593857 - 1595485
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGCAA
5'SS Class:
major
3'SS Sequence:
TCTCTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
AGTATATTAAGA
Flanking Amino Acid:
PNDPVSIPNHRLMVWPGFTS
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.2
59.6
40.6
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
82.8
0.74
0.9
83.9
31.1
Minor 5ss
32.5
-2
3.1
38.7
46.5
Minor BPS
48.3
-0.1
1.9
60.31
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593
ENSAPLT00000031579
1588541 - 1608658
20118
ENSAPLT00000012861
1588541 - 1608658
20118