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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1601088_1601207_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1601088 - 1601207
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCTAC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTGCTTTAATT
Flanking Amino Acid:
EIGRLIDYIQKDDGVQKELR
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
64.8
36.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76
0.59
1
73.3
40.9
Minor 5ss
56.9
0.23
2.3
67.1
38.5
Minor BPS
73.1
0.8
1.3
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593
ENSAPLT00000031579
1588541 - 1608658
20118
ENSAPLT00000012861
1588541 - 1608658
20118