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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1603122_1603470_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1603122 - 1603470
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TCTCCCTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGCTTCTTAAAA
Flanking Amino Acid:
QQSITPDTNIAVCILSSSRK
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
79
34.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
69.5
0.44
1
70.1
28.1
Minor 5ss
49.6
-0
2.5
70.2
34.8
Minor BPS
65
0.47
1.4
67.49
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593
ENSAPLT00000031579
1588541 - 1608658
20118
ENSAPLT00000012861
1588541 - 1608658
20118