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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1603672_1603960_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1603672 - 1603960
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
GATTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TCTTTGTTGATT
Flanking Amino Acid:
GGELWSVEIPLKQVMVVGID
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
84
0.76
0.8
81
36.2
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
57.2
0.31
2.1
77.73
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031579
1588541 - 1608658
20118
ENSAPLT00000012861
1588541 - 1608658
20118
ENSAPLT00000038583
1588541 - 1616133
27593