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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1604065_1604592_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1604065 - 1604592
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AGTGCCTTAAAT
Flanking Amino Acid:
FVASLNQTMTRWFSRCVVQS
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
81.9
32.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.7
0.71
0.9
76.6
36.5
Minor 5ss
44.4
-0.6
3.2
66.3
44.6
Minor BPS
69.6
0.69
1.5
80.8
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593
ENSAPLT00000031579
1588541 - 1608658
20118
ENSAPLT00000012861
1588541 - 1608658
20118