About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1605447_1606332_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1605447 - 1606332
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTCACTTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
DCLKTVGKDYTPKLTVIVVK
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.9
0.56
0.9
73.9
35.7
Minor 5ss
39.2
-1.2
3
49.6
39.9
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593
ENSAPLT00000012861
1588541 - 1608658
20118