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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1605447_1607653_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1605447 - 1607653
Intron Length:
2207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TCTTCTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTATAA
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
DCLKTVGKDYTYDFFIVSQA
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
54.9
0.12
1.2
53
42.8
Major PPT
86.1
0.81
0.7
80.6
29.9
Minor 5ss
39.2
-1.2
3
49.6
39.9
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031579
1588541 - 1608658
20118