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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1607802_1616022_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1607802 - 1616022
Intron Length:
8221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTTTTTTAGAA
Flanking Amino Acid:
KLCHMYYNWSVLDSHKTCCN
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
91.2
27.5
Major BPS
70
0.5
1
67
39.8
Major PPT
72
0.5
0.8
66.1
34.5
Minor 5ss
42.1
-0.9
2.9
61.3
43
Minor BPS
62.9
0.4
1.6
75.99
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012285
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038583
1588541 - 1616133
27593