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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1612150_1614517_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1612150 - 1614517
Intron Length:
2368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTACCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CATTCAATAAAT
Flanking Amino Acid:
DTPMRTKAKRVPPENTGTAR
Intron Amino Acid Position:
1318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.3
39.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
61.9
0.27
1
56.1
39.2
Minor 5ss
39.2
-1.2
2.8
43.8
43.8
Minor BPS
50.5
0.09
2
73.19
42.7

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027396
1611961 - 1680878
68918
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000030488
1611961 - 1666112
54152