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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1615844_1617715_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1615844 - 1617715
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
CCTTTTTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTTTGTTTAACA
Flanking Amino Acid:
RESSPNVDVEAELTFCTGDI
Intron Amino Acid Position:
1249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
38
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
84
0.77
0.7
80
25.4
Minor 5ss
38.7
-1.3
3
49.8
46.1
Minor BPS
69.3
0.6
1.8
78.6
38.6

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025366
1613886 - 1666112
52227
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000030488
1611961 - 1666112
54152
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000027396
1611961 - 1680878
68918
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000048531
1611961 - 1768405
156445