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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1617820_1621343_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1617820 - 1621343
Intron Length:
3524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
GTGATTGGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTGATTGGAACA
Flanking Amino Acid:
LPLNTPVEKIERNRRSGRQP
Intron Amino Acid Position:
1214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
55.8
0.13
1.2
50.3
47
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
43.1
-0.5
2
52.91
39.4

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000030488
1611961 - 1666112
54152
ENSAPLT00000025366
1613886 - 1666112
52227