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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1623983_1627128_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1623983 - 1627128
Intron Length:
3146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGCCGA
5'SS Class:
major
3'SS Sequence:
TTTACTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATT
Flanking Amino Acid:
QRTMASEYRYDGYGGHDHLS
Intron Amino Acid Position:
1218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
52.8
45.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.6
0.69
0.8
76.4
32.1
Minor 5ss
43.8
-0.7
2.9
56.4
47.8
Minor BPS
71.4
0.75
1.4
84.15
37

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000030488
1611961 - 1666112
54152
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000027396
1611961 - 1680878
68918
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000025366
1613886 - 1666112
52227
ENSAPLT00000034469
1611961 - 1768405
156445