About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1623983_1630340_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1623983 - 1630340
Intron Length:
6358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTACTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATT
Flanking Amino Acid:
RSRPMLVPSIDGYGGHDHLS
Intron Amino Acid Position:
1096

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
63.5
43.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.6
0.69
0.8
76.4
32.1
Minor 5ss
36.1
-1.6
2.6
39.1
40.3
Minor BPS
71.4
0.75
1.4
84.15
37

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013485
1611961 - 1673408
61448