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Intron Name: Anas_platyrhynchos_platyrhynchos_16_1627282_1630340_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1627282 - 1630340

Intron Length:

3059

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTTAGTTGG

5'SS Class:

major

3'SS Sequence:

TTTTTCTTCGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATGTTTTAATA

Flanking Amino Acid:

RSRPMLVPSIEITMDSNSEG

Intron Amino Acid Position:

1167

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.2

63.5

43.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.6

0.85

0.6

22.5

Minor 5ss

36.1

-1.6

2.6

39.1

40.3

Minor BPS

66.6

0.52

1.3

71.36

35.3

Associated Gene:

Gene:

RIMBP2

Ensembl Gene ID:

ENSAPLG00000012892

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025366

1613886 - 1666112

52227

ENSAPLT00000034469

1611961 - 1768405

156445

ENSAPLT00000023308

1611961 - 1768405

156445

ENSAPLT00000030488

1611961 - 1666112

54152

ENSAPLT00000018347

1611961 - 1768405

156445

ENSAPLT00000027396

1611961 - 1680878

68918

ENSAPLT00000027380

1611961 - 1676958

64998

ENSAPLT00000048531

1611961 - 1768405

156445