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Intron Name: Anas_platyrhynchos_platyrhynchos_16_1635554_1637104_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1635554 - 1637104

Intron Length:

1551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CCCTGCTGATTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAAAGAT

U12 Branch Point Sequence:

TCTCCCTCACCC

Flanking Amino Acid:

FLKGSELGKQPHYCHGEEYH

Intron Amino Acid Position:

760

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

59.6

0.24

1.1

55.4

40.4

Major PPT

58.8

0.2

58.1

37.2

Minor 5ss

37.8

-1.4

2.7

46.1

Minor BPS

54.8

0.13

1.9

68.24

43.3

Associated Gene:

Gene:

RIMBP2

Ensembl Gene ID:

ENSAPLG00000012892

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023308

1611961 - 1768405

156445

ENSAPLT00000030488

1611961 - 1666112

54152

ENSAPLT00000018347

1611961 - 1768405

156445

ENSAPLT00000027396

1611961 - 1680878

68918

ENSAPLT00000048531

1611961 - 1768405

156445

ENSAPLT00000013485

1611961 - 1673408

61448

ENSAPLT00000027380

1611961 - 1676958

64998

ENSAPLT00000025366

1613886 - 1666112

52227

ENSAPLT00000034469

1611961 - 1768405

156445