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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1637255_1638732_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1637255 - 1638732
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
GTTGCTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTTGCTTTGATA
Flanking Amino Acid:
AAQRVAESNRMERRSVFSER
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60
39.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
68.7
0.42
1
65
41.3
Minor 5ss
28.4
-2.5
3.5
29.9
43.2
Minor BPS
64.2
0.44
1.3
70.36
36.3

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000027396
1611961 - 1680878
68918
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000025366
1613886 - 1666112
52227
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000030488
1611961 - 1666112
54152