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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1639201_1639587_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1639201 - 1639587
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTGTGTACCC
Flanking Amino Acid:
GYGVYVKGQRVAEVIFPTAE
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.6
0.53
1
65.9
44.5
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
46.3
-0.3
2.5
69.26
43

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000025366
1613886 - 1666112
52227
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000030488
1611961 - 1666112
54152
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000027396
1611961 - 1680878
68918