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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1643454_1643909_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1643454 - 1643909
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGGACTTTAATG
Flanking Amino Acid:
GDMDEDGFYEGELLDGQRGL
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.9
0.61
0.8
70.5
34.9
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
57.9
0.11
1.4
55.06
40.6

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000025366
1613886 - 1666112
52227
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000030488
1611961 - 1666112
54152
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000027396
1611961 - 1680878
68918