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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1647885_1652756_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1647885 - 1652756
Intron Length:
4872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTCTTCACT
Flanking Amino Acid:
VNGIATSIGKGHESPSGSRC
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.1
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.1
0.52
1
66.3
39.8
Minor 5ss
33.8
-1.8
2.9
41.1
44.9
Minor BPS
72.3
0.78
1.7
88.23
36.9

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025366
1613886 - 1666112
52227
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000030488
1611961 - 1666112
54152
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000027396
1611961 - 1680878
68918
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000048531
1611961 - 1768405
156445