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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1658577_1661785_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1658577 - 1661785
Intron Length:
3209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTATGAAAACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
KQQEIELLQKAQVEAKKEHE
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
46.2
-0.2
1.2
37.2
42.5
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027396
1611961 - 1680878
68918
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000025366
1613886 - 1666112
52227
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000030488
1611961 - 1666112
54152