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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1661891_1667678_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1661891 - 1667678
Intron Length:
5788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
73.8
0.53
1
70.9
37.7
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027396
1611961 - 1680878
68918
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000034469
1611961 - 1768405
156445