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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1667802_1673318_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1667802 - 1673318
Intron Length:
5517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACCA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACATTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
65.3
40.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
37.8
-1.4
3.1
49.4
46.3
Minor BPS
53.9
0.2
1.5
65.97
39.6

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027380
1611961 - 1676958
64998
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000013485
1611961 - 1673408
61448
ENSAPLT00000027396
1611961 - 1680878
68918