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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1673409_1715319_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1673409 - 1715319
Intron Length:
41911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
ATTTGTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TGGCCTATAACA
Flanking Amino Acid:
NQEYHHWQFLKNELKDDVQE
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
0.9
79.4
29.5
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
76.6
0.6
0.9
74
41
Minor 5ss
42.5
-0.8
3
59.8
40
Minor BPS
57.1
0.22
1.6
66.71
39.4

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000018347
1611961 - 1768405
156445