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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1715458_1752838_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1715458 - 1752838
Intron Length:
37381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTTTATT
Flanking Amino Acid:
GSVCVLAASKFGNDPSCLQP
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.6
0.62
0.9
73.2
36.1
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
59.2
0.37
2
83.31
38.3

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018347
1611961 - 1768405
156445
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445