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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1757759_1762066_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1757759 - 1762066
Intron Length:
4308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATCGATGAATT
Flanking Amino Acid:
LTKEQEEDKVSKKGNNKAKQ
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
78.2
0.63
0.9
72.7
37.4
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
46.8
-0.1
2.1
69.18
41.3

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000018347
1611961 - 1768405
156445