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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1762184_1768402_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1762184 - 1768402
Intron Length:
6219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CCTTTGTTACAG
Flanking Amino Acid:
MKAISHILDHS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80.4
0.68
0.8
74.5
33.8
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
42
-0.7
2.3
47.05
46.3

Associated Gene:

Gene:
RIMBP2
Ensembl Gene ID:
ENSAPLG00000012892
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048531
1611961 - 1768405
156445
ENSAPLT00000034469
1611961 - 1768405
156445
ENSAPLT00000023308
1611961 - 1768405
156445
ENSAPLT00000018347
1611961 - 1768405
156445