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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1771506_1772921_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
1771506 - 1772921
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCAATCTAAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
58.1
0.33
1.7
72.89
43.9

Associated Gene:

Gene:
STX2
Ensembl Gene ID:
ENSAPLG00000016913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048139
1769411 - 1786818
17408