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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1771506_1773181_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1771506 - 1773181
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGGTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCAATCTAAACT
Flanking Amino Acid:
AVKYQSKARRKLIFIIICVT
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
40.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
45
-0.5
3.1
56.7
47.6
Minor BPS
58.1
0.33
1.7
72.89
43.9

Associated Gene:

Gene:
STX2
Ensembl Gene ID:
ENSAPLG00000016913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047125
1769411 - 1786818
17408