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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1774813_1774917_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1774813 - 1774917
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TGTTCTTCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
GTGTCTGTATTT
Flanking Amino Acid:
SGNPSIFTSDIISDSQITRQ
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
70.1
0.45
1
71
33.7
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
47.4
-0.1
2.2
67.82
43.9

Associated Gene:

Gene:
STX2
Ensembl Gene ID:
ENSAPLG00000016913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048139
1769411 - 1786818
17408
ENSAPLT00000047125
1769411 - 1786818
17408