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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1774992_1776728_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1774992 - 1776728
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTC
Flanking Amino Acid:
KGRIQRQLEITGKTTTDEEL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.8
75.2
39
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
61.5
0.34
1.5
70.16
35.8

Associated Gene:

Gene:
STX2
Ensembl Gene ID:
ENSAPLG00000016913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048139
1769411 - 1786818
17408
ENSAPLT00000047125
1769411 - 1786818
17408