Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1776838_1777037_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1776838 - 1777037

Intron Length:

200

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGACAA

5'SS Class:

strong_major

3'SS Sequence:

CCTGTAAAAACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ACATTTTTAAAT

Flanking Amino Acid:

SVDLRIRKTQHSVLAHKFVE

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

69.6

36.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

58.2

0.18

1.1

52.1

39.8

Minor 5ss

37.4

-1.4

47.2

48.2

Minor BPS

0.49

1.3

71.8

39.2

Associated Gene:

Gene:

STX2

Ensembl Gene ID:

ENSAPLG00000016913

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048139

1769411 - 1786818

17408

ENSAPLT00000047125

1769411 - 1786818

17408