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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1780449_1786788_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1780449 - 1786788
Intron Length:
6340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTATTTCATA
Flanking Amino Acid:
MKDRLADLQECKGNEDGETV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
80.2
31.8
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
58.5
0.26
1.9
75.77
36

Associated Gene:

Gene:
STX2
Ensembl Gene ID:
ENSAPLG00000016913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048139
1769411 - 1786818
17408
ENSAPLT00000047125
1769411 - 1786818
17408