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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1790982_1791871_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1790982 - 1791871
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGGC
5'SS Class:
major
3'SS Sequence:
ATTTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
CATGCTTCCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
64.8
41.3
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
81.3
0.71
0.8
74.8
29.7
Minor 5ss
35.1
-1.7
3.6
50.2
46.4
Minor BPS
44.6
-0.3
2
60.42
44.1

Associated Gene:

Gene:
RAN
Ensembl Gene ID:
ENSAPLG00000013592
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014168
1790883 - 1795239
4357